Nobel Prize in chemistry honors 3 scientists who used AI to design proteins — life’s building blocks

Combination image showing this year's winners of the Nobel Prize in chemistry: University of Washington computational biologist professor David Baker (left) at his lab in Seattle, Washington, and Demis Hassabis and John M. Jumper at the offices of Google DeepMind UK in London, Britain, on October 9, 2024. (REUTERS/AFP photos)
Short Url
Updated 10 October 2024
Follow

Nobel Prize in chemistry honors 3 scientists who used AI to design proteins — life’s building blocks

  • David Baker created a computer program called Rosetta that helped analyze information about existing proteins in comprehensive databases to build new proteins that don’t exist in nature
  • Demis Hassabis and John Jumper created an artificial intelligence model that has predicted the structure of virtually all the 200 million proteins that researchers have ever identified

LONDON: Three scientists who discovered powerful techniques to decode and even design novel proteins — the building blocks of life — were awarded the Nobel Prize in chemistry Wednesday. Their work used advanced technologies, including artificial intelligence, and holds the potential to transform how new drugs and other materials are made.
The prize was awarded to David Baker, a biochemist at the University of Washington in Seattle, and to Demis Hassabis and John Jumper, computer scientists at Google DeepMind, a British-American artificial intelligence research laboratory based in London.
Heiner Linke, chair of the Nobel Committee for Chemistry, said the award honored research that unraveled “a grand challenge in chemistry, and in particular in biochemistry, for decades.”
“It’s that breakthrough that gets awarded today,” he said.
What is the 2024 Nobel Prize in Chemistry for?
Proteins are complex molecules with thousands of atoms that twist, turn, loop and spiral in a countless array of shapes that determine their biological function. For decades, scientists have dreamed of being able to efficiently design and build new proteins.
Baker, 62, whose work has received funding from the National Institutes of Health since the 1990s, created a computer program called Rosetta that helped analyze information about existing proteins in comprehensive databases to build new proteins that don’t exist in nature.
“It seems that you can almost construct any type of protein now with this technology,” said Johan Åqvist of the Nobel committee.
Hassabis, 48, and Jumper, 39, created an artificial intelligence model that has predicted the structure of virtually all the 200 million proteins that researchers have ever identified.
The duo “managed to crack the code. With skillful use of artificial intelligence, they made it possible to predict the complex structure of essentially any known protein in nature,” Linke said.

Why does this work matter?
The ability to custom design new proteins — and better understand existing proteins — could enable researchers to create new kinds of medicines and vaccines.
It could also allow scientists to design new enzymes to break down plastics or other waste materials that would neutralize pollution, Baker told a news conference, or even come up with entirely new material for semi conductors.
“I think there’s fantastic prospects for making better medicines — medicines that are smarter, that only work in the right time and place in the body,” Baker told The Associated Press.
One example is a potential nasal spray that could slow or stop the rapid spread of specific viruses, such as COVID-19, he said. Another is a medicine to disrupt the cascade of symptoms known as cytokine storm.
“That was always the holy grail. If you could figure out how protein sequences folded into their particular structures, then it might be possible to design protein sequences to fold into previously never seen structures that might be useful for us,” said Jon Lorsch, a director at the NIH.
How did the winners react?
Baker told the AP he found out he won the Nobel during the early hours of the morning alongside his wife, who immediately started screaming.
“So it was a little deafening, too,” he said.




Computational biologist professor David Baker speaks to coworkers at the University of Washington in Seattle after receiving the 2024 Nobel Prize in chemistry on October 09, 2024. (Getty Images/AFP)

Hassabis said he was just having a “normal morning” at home when he eventually got the call.
The Nobel committee didn’t initially have his number and first managed to get hold of his wife, but she hung up on them a few times, he told an online news briefing.
“They kept persisting and then I think she realized it was a Swedish number and then they asked for my number,” he said.
“It’s so incredible. It’s so unreal at this moment,” said Jumper, a researcher and director at Google DeepMind. “And it’s wonderful.”
What was the role of AI?
One of Britain’s leading tech figures, Hassabis co-founded the AI research lab DeepMind in 2010, which was acquired by Google in 2014. Among its past breakthroughs was developing an AI system that mastered the Chinese game Go and defeated the game’s human world champion.
In the past researchers labored for months or years to decode the structure of a single complex protein.
But the AI model created by the DeepMind researchers, called AlphaFold, “can determine the structure of a protein pretty accurately within a few seconds or minutes,” Hassabis told the AP in an interview, adding that this saves researchers “years of potentially painstaking experimental work.”
The two research groups learned from each other’s work.




Johan Aqvist, member of the Nobel Committee for Chemistry, Hans Ellegren, permanent secretary and Heiner Linke, committee chairman award this year's Nobel Prize in Chemistry to David Baker, Demis Hassabis, and John Jumper at the Royal Swedish Academy of Sciences, in Stockholm, Sweden, on Oct. 9, 2024. (TT News Agency via AP)

Baker said Hassabis and Jumper’s artificial intelligence work gave his team a huge boost.
“The breakthroughs made by Demis and John on protein structure prediction really highlighted to us the power that AI could have,” said Baker. “And that led us to apply these AI methods to protein design.”
Science has sped up, said Jumper. “It is a key demonstration that AI will make science faster “
It’s the second Nobel prize this year awarded to someone with links to artificial intelligence research at Google.
Nobel physics prize winner Geoffrey Hinton, 76, often called the “godfather of AI,” also worked at the California-based tech company until quitting so he could speak more openly about the potential downsides of AI.
“I’m hoping AI will lead to tremendous benefits,” Hinton told a news conference Tuesday. “I’m convinced that it will do that in health care.”
“My worry is that it may also lead to bad things. And in particular, when we get things more intelligent than ourselves, no one really knows whether we’re going to be able to control them.”
More about the Nobels
Wednesday’s chemistry prize winners represent a younger generation taking forward the work of the AI pioneers honored for physics, said Michael Kearns, a computer scientist at the University of Pennsylvania.
They are making AI models “scalable and practical and applying it to very important scientific problems.”
Baker gets half of the 11 million Swedish Kronor ($1 million) prize money, while Hassabis and Jumper share the other half.
The Nobel announcements opened Monday with medical researchers Victor Ambros and Gary Ruvkun winning the medicine prize. Hinton and fellow AI pioneer John Hopfield, 91, won the physics prize.
The awards continue with the literature prize Thursday, the Nobel Peace Prize Friday and the economics award on Oct. 14.
The prize money comes from a bequest by the award’s creator, Swedish inventor Alfred Nobel. The laureates are invited to receive their awards at ceremonies on Dec. 10, the anniversary of Nobel’s death.


Spain cites Israeli ‘insults’ in decision to withdraw ambassador

Updated 5 sec ago
Follow

Spain cites Israeli ‘insults’ in decision to withdraw ambassador

  • With the ambassador’s removal, Spain’s diplomatic representation will now be handled by its charge d’affaires
  • “It’s become clear that Spain’s goodwill in maintaining cordial relations hasn’t been reciprocated,” Albares said

MADRID: Spain on Thursday explained its decision to permanently withdraw its ambassador to Israel, citing repeated “insults and slanders” by the country.
Veteran diplomat Ana Maria Salomon Perez was officially relieved of her duties on Tuesday at the proposal of Spanish Foreign Minister Jose Manuel Albares.
She was recalled from Tel Aviv in September after Spanish Prime Minister Pedro Sanchez unveiled measures designed to “stop the genocide in Gaza, pursue its perpetrators and support the Palestinian population.”
With the ambassador’s removal, Spain’s diplomatic representation will now be handled by its charge d’affaires, a lower-ranking official whose status is meant to reflect the downgraded relations.
Israel withdrew its ambassador to Madrid in 2024 after Spain recognized Palestinian statehood and has since also been represented by a charge d’affaires.
“It’s become clear that Spain’s goodwill in maintaining cordial relations hasn’t been reciprocated — not diplomatically — through an increase in Israel’s representation in Spain, nor by restraining insults and slanders aimed at the Spanish people,” Albares said.
“As a result, keeping an ambassador who had been called back for consultations for six months no longer made sense,” he added during an interview with Spanish public television.
Spain’s decision to definitively retire the ambassador follows years of tense exchanges between the two governments.
Sanchez, one of the most vocal critics of Israel’s war on Gaza, has also opposed the US-Israeli military strikes on Iran that began on February 28.
Israeli Foreign Minister Gideon Sarr has accused the Spanish government of “standing with tyrants” by opposing the US-Israeli attacks on Iran.
He also accused Spain of being “complicit in inciting genocide against Jews and war crimes” after it recognized a Palestinian state.
Spain only established diplomatic ties with Israel in 1986 following the death of dictator General Francisco Franco in 1975.
Under Franco, Spain avoided recognizing Israel and maintained closer diplomatic ties with Arab states.